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Spiral  Molecular  Structures 
the  Basis  of  Life. 


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SPIRAL        MOLECULAR        STRUCTURES 
THE        BACIS        or        LIFE. 

(Second  Edition) 


-  -D 

-  r=\ 


oy 
C^.rl   F.    Krafft, 
Washington.,    D.    C. 


s— 3 

■            (-i 

1928 


1. 

SPIRAL   MOLECULAR    STRUCTURES 
THE   BASIS    OE   LIFE. 

Introduction. 


Thoro   arc   certain   iDiological   proc3GSGS    such 
as   growth,    va,riation,    and   reproduction,    which   are 
exhibited   by    3V  :ry  living   organism,    regardless   of 
its   rank   in   the  plant   or   animal   kingdom.      These 
processes    establish    in   nature  a  sharp   line  of 
demarcation   between  living   and   ncn-living   things, 
since   none   of   the  phenomena  of   physics   or   chemistry 
exhibit    anything   that    is    similar   or   analogous    to 
these   fundamental   life  processes. 

Biological   grov;th   involves    not    only  the 
accretion   of   tissue-building  material,    but    also 
many   remarkable   chemical   transformations   which 
take  place   during  metabolism,    as   well    as    the 
dev elopmierit,    in  m.ost   cases,    of  highly   complex   and 
heterogeneous    structures.      The   nearest    approach   to 
this    in   the    inorganic   world    is   the   growth   of   crystals, 
but    crystal   growth  produces   neither   the   remarkable 
chemical   transformations   nor   the   complex   structures 
which   often   result   from   biological   growth,    not    to 
mention   several   minor  differences    such   as   the 
polyhedral    form   of   crystals    as    distinguished  from 
the   rounded  form   of  most   living   organisms,    and 
the  hardness   of   crystals    as   distinguished   from   the 
softness   of  most    living   tissues.      The  differences 
betv^een   crystal   growth   and   biological   growth   are 
so   manifest   that    it    seems   hardly  fair   to    assign 
them  to    the   sam.e   category,    and  much   less   to   pro- 
pose  the   one   as    an    explanation   for   the   other. 


2S904 


2. 


Biological  variation  differs  from  all  inor- 
ganic changes  and  motamorphosos  in  that  the  newly 
acquired  structuroc  cxort  a  directing  influence 
upon  the  future  grov/th  of  the  individual,  and  are 
perpetuated  "by  a  process  of  heredity. 

Biological  reproduction  is  like-zrisG  so  dis- 
similar from  any  of  the  other  processes  of  nature 
that  it  seems  impossible  to  establish  even  the 
remotest  analogy,  and  much  loss  to  attempt  to 
explain  it  on  the  basis  of  any  of  the  known  phe- 
nomena of  physics'  or  chemistry. 

These  fundamental  life  processes  are  exhibited 
just  as  fully  and  completely  by  the  simplest  bacteria 
as  by  the  highest  plants  and  animals*   All  living 
organism.s,  notv;ithstanding  their  diversity  of  form 
and  appearance,  must  possess  something  in  common 
which  gives  rise  to  that  peculiar  characteristic 
called  "life". 

If  th 3  fundamental  life  processes  are  due 
primarily  to  some  specific  configuration  of 
tissues  or  membranes,  then  such  configuration 
would  have  to  occur  in  every  living  organism, 
including  the  simplest  bacteria.   Y/e  find  in 
nature  many  structural  uniformities  which  occur 
more  or  less  extensively  among  certain  species 
of  plants  and  animals,  but  these  are  the  result 
of  evolution  and  v;ill  be  found  to  disappear  as 
we  go  down  the  scale  of  plant  or  animal  life. 
Even  the  chromosomes  which  occur  in  the  cells  of 
all  higher  plants  and  animals  have  never  ^03on 
observed  in  any  of  the  bacteria,  and  therefore 
cannot  be  regarded  as  th-e  primary  and  original 
cause  of  the  fundament^-!  life  processes.   It 
would  not  be  justifiable,  in  the  absence  of 
experimental  proof,  to  assume  that  chromosomes 
or  similar  structural  complexities  exist  in 
bacteria,  merely  because  they  have  been  observed 
to  exist  in  the  cells  of  the  higher  plants  and 
animal  s . 


3. 


That    the  fundamental    life  procossss  must 
"be  duo,    either  wholly  or  partly,    to    specific 
chemical    structures    is   generally   admitted,    hut 
there   is    a  pr  availing   opinion   that    the  molecular 
structures   which   are   necessary  for   this   purpose 
must   be   extremiCly   complex.      The   failure  of    all 
previous    efforts   to   devise   some   type  of  molecular 
structure  which  would   function    in   a  manner 
similar   to   the  fundamental   life  processes   does 
not,    hov/ever,    prove   that   the   solution   of   the 
problem  must   lie   in   the   direction   of    extreme 
complexity.      The   complex  molecular   structures 
of  which   the  higher  plants    and   animals    are 
comiposed  have   developed  gradually   in   the   course 
of    evolution,    and   the   fact   that   they   are   necessary 
for   the  proper  physiological   functioning  of   the 
particular   organisms    in  vjhich   they  now  occur.;- 
does   not  prove  that    they  v^ere   also   the   original 
cause  of   the  fundamental   life  processes    in  the 
more  primitive  ^'xrganisms   from  v/hich   these  higher 
plants    and    animals   have   developed.      If    extremely 
com^plex  molecular   structur3S   v-^ere   necessary  for 
life  of    any  sort,    then   it   vfould   he  highly   im- 
prchabl  e  that   life   could    ev  3r  have  originated 
spontaneously. 


4. 


The        Ch3mic^l        Basis        of        Life. 


If   life   cannot   bo   due,    prirr.arily,    either   to 
specific    arrangaments   of   tissues   or  inemToranes   or 
to    extrernely   complex  molecular   structures,    then 
it  must   be  due  to    some   comparatively   simple 
principle  of    chemistry  vrhich  has   not    yet   been 
discovered.      To    find   a   cluo   to    this   we  must    in- 
vestigate  the  molecular   structure  of  prot3ins, 
because  those   constitute  practically   all    the 
structural    material    in   the   bodies   of   the   simplest 
unicellular   organismiS    after   removal   of   the  vat  3r, 
Althougl':   small    amounts    of   fats    ar  ^   also    present, 
yet   these   do    not    constitute   structural   material 
but   appear   to    be  merely   the  by-products   of 
certain  kinds   of   protein  metabolism. 

Protein   substances,    upon  hydrolytic    decom- 
position,   always    yield   a  mixture  of   amino    acids 
or   their  dik  etopip  erazine   derivatives.      To    the 
alpha   carbon   atom  of   these   acids   thsra   is    alv/ays 
attached   one   amino    group    and   one  hydrogen   atom, 
and  usually   also    a  more   complex   group,    so   that 
they  may  be   represented   generally   as   foilov/s: 

ITH2-CKR-CO-OH. 

The   structural    formulae  of   the  more   im- 
portant  ar;:ino    acids    are    as    follows: 


5. 


Glycine  COOH 

t 

HCH 
» 


Alanine 


Serine 


ITHo 


Cystine  HGOC 

t 


HgN 


Aspartic    acid 


COOK 

CK3- 

-CH 
f 

KKg 

COOH 

t 

HOCH2— - 

CH 
1 

ITH2 

COOH 

T 

.0  -S-S-II 

oC  — CH 
^    1 

1^2 

COOH 

'OC-CH2- 

-CH 

KH2 


Proline  CGCH 

CH^  » 


'2  ^- 


HgC 


CH- 


Oxyprol  ina 


HOCK 


6. 


CH. 


CH. 


COOK 
f 

CH 
» 


Glycine-prolin 3   anhydride 

(E.    A"b4erhald*n  &  15.    Komrn, 
Z.    physiol.    Ch-TH.,    145,    308,    19.^5.) 


Hp,Q 


K^C 


/ 


CO  —  CH 


/ 


TJ 


\ 


CH  — 


CH. 


^ 


UK 


/ 


CO 


Glutamic    acid 


HOOC-CHg-CHg- 


COOK 

! 

■CH 
t 

ITK^ 


Ornithine 


COOK 
f 


NHg-CK^-CHg-CHg— CH 


rlH 


o 


7. 

Histidino 


CCOH 
/  C-CKo  — CH 

hi:  I      "     » 

CH  "^  "^ 


Arginins 


ITH 


Caprins  CO OH 

f 

CH3-CK2-CH2-CH2— CH 

ITHo 


Lysin3  CCOH 

! 

H2N-CH2-CH2-CK2-CH2  — CH 

^2 


Valina  COOK 

f 

"  CH—CK 


CH3  . 


CH3 


\ 


jMHo 


COOK 


>TH^^  » 


C-m--CH2-CH2-CH2--CH 


L  3Ucin3 


8. 


COOH 


CH. 


CH. 


CH-CKo  — 


2 


CK 
t 


Iso-]  2ucin3 


CCOK 


CK 


^-. 


CH- 


CHs-CK^'- 


OH 


T.TTT 


Ph  anyl  -  al  r.,nin  9 


H 


HC 


-    C 


C 

C  '^' 
H 


.C-CKg- 


COCK 
f 

CH 
f 


Tyrosma 


H 


HOC 


C    '■■ 

C    - 
H 


H 

'I 

*^ 

C 
H 


C—  Uj.Xo' 


COOH 

■CH 
» 


9. 


Tryptophp.n  3 

H  COOK 

-  C  :.,^  ' 

HC  ^        '^-  Q- -•     C~CHp  — OK 

ii  i  if      "^ 

HC  /-C        .  CH 

H  i]H 


t 


Leucin3-gluta,!i]ic    «.cid   .anhydrida 
(p.  A.    L?vin3  &  W.A.    Beatty, 
Ber.    59,    2060,    1906.) 

^,  CO — ITIi^  ^  CK3 

HOOC-CHp-CK^-CH'"  ^Z.  CH-CHp-CH  ^ 

^      ^      -^  i:tT CO  -^  ^       -^  CH3 


Valyiz-leucine 

(?:.    Abderlial  den,    Z.    Physiol.    Oh  3m., 

131,    284,    1923.) 

CH^  .CO  —  :iH  .^  ^.  CH3 

^^  CH-  CK  :  '^  CH-  CHg  -  CH  '" 

CH3 ""  ""■mi  —  CO  -^'^  ^^^^  CH3 


Leucine   anh^.^dride 

(E.    Aoderhalden  &  K  Punk, 

Z.    physioi.    Che-T,.    53,    19,    1917.) 

CH^  CO  — KH^  ,,.CH3 

'"'^  CH-  CHp  -  CH  '^'  ^  CH-  CHo  -  CH  " 

CH^-^'  ^  irn  —  CO ""  ^       "^"CiHj 


10. 


Th3S3   amino    acids   will    readily   cond-Dnsc, 
v/ith   the    3liTnination   of   water,    to    form    eithsr 
chain   structurss   known   as  polypeptides,    or   ring 
structures   knovn   as   dik  etopiperazines  . 
(Smil    Fischer,    Unt  3rsuchung  3n   liber  Aminos^iuren, 
Polypeptide,    und  ProteSne,    1899   -   1906; 
Plimr::er's    Chemical    Constitution   of   the  Proteins, 
Monographs   on  Biochemistry,    Longmans,    1912) 

3   NHg-CRK-CO-OH   = 

im2-CRH-C0-!'^-CRK-C0-lTK-CRPI- CO-OH   +    2   HO; 


2   NHg-CRH-CO-CK   = 

CRH CO,,^ 

HN  ■  ^^IIH   +    2   H9O 

"^•CO  •  CRH--^'' 


^ 


Since  protains    constitute  the  principal 
structure-lDuilding   food  for   animals,    and  upon 
digestion   are  decomposed   into    amino    acids,    in 
v^hich    form   th  3y   are   assimilated   by   th  3   tissues, 
it    is    gensrally    thought  that   the  phenomenon   of 
grovjth    involv  3S    condensation  processes    of    a 
similar   character. 

The   frequent    occurrence  of   diketopiper- 
azine   rings    among   th 3   disintegration  products   of 
proteins    seems    to    indicate  that    this  may   be    the 
form    in  which   the   alpha   am.ino    acid   groups   occur 
in   nature,    but    a  fatal    objection   to    this  thsory 
is   that    diketopiperazines    cannot    grow   by    con- 
densation with   additional    amino    acid  molecules. 
If   our  purpose   is   to    solve   th  3  problem  of   life, 
then    the   biological    side  of    the  probl  3m  must   be 
given   full    consideration,    and   we   should  have   but 
little  patience  with   any   theory  which   explains 
only  the   chemical    but   not    the  biological    facts. 


II. 


The  polypeptide   thoory  teaches    that   the 
amino    acid   groups    occur   in   nature   in    the  form   of 
long  polypeptide   chains.      This   theory   offers    at 
least    a  partial    explanation   for   the  phenomenon 
of   growth,    as   well    as   for   structural   variation, 
hut    in    its   present    form    is    inadequat3    in    th^\t 
it    does   not   account   for   that   definite  morphology 
which    is  possessed   "by   all    living  organisvns,    nor 
for    spontaneous    division   with  the   transmission 
of   hereditary   charact  sristics   to    the  progeny. 


There   is,    however,    another  type   of   struc 

ture,    namely   the  helical    spiral,  which   retains 

the    3ssential    characteristics   of  both   the  ring 
and    the    chain. 


12. 


Polypoptids        S-pJrals. 


If  W'3    as  sum  2   that    th  3  val?nci3S    of   the 
carbon   ato^    ar3   arrang3d   like   th s   corners   of    a 
regular    tetrahadroE,    and   that   th  2  three  val3nci9S 
of    tri-val  ent    nitrogen    in    amino    compounds    are 
about    3qual]y  distributed    around   an    equatorial 
circle,     (vhich   arrangement   appears   to   b :-   the 
only   on  ^'   that   is    consistent   with    rill    knov/n 
chemical    facts,)    then   the  polypeptide^  chain  may 
be   coiled   around   on   itself    so    as   to    form   a  "• 

h  el  i  c  al    sp  i  r  al    h  av  i  ng   sub  s  t an  t  i  al  1  y   th  3   s  am  3 
di^jT:]eter   as    the  diketopip  erasine   ring. 


KO 


^ 


/ 


L  J  C7/ 


H-N 


0 


\ 


C 


HO 


'/ 


n 


/  \ 

R        H 

/  \ 

R        K 


A  polypeptide   spiral    in  KaCl    solu 


1 


33. 


Th  D   nitrog?n   atoms   v.'ill    appear    in   tv/o    rovs 
on    opposit3   si^.3s   of    th3   ppiral  ,    and   the   co^npl  3X 
tid3   chain?    r3pr3S3ntod   by   th  s  R's    in    th  ?  previous 
equations,    as   well    as    th  3    carbonyl    gr-oups,    wil] 
1  i.k  'Wis  3  arrang3   th3Tnselv3S   along   other   diaTri3tri- 
cally   opposite   lines.       Chsrr.ic^J.   union   will    probably 
tak3  place  b3tw3en    th  3   succes?iv3  nitrogen    atoviis 
by  virtue   of   th3ir   fourth    and   fifth   valenci3S, 
and  p3rhn.ps    also    betv^een   th  3   successive   carbonyl 
groups    in    the  manner    sho^.vn.       The   nitrog3n   atoms    at 
th  3    3nds   of    the    spiral    will    probably  units  with 
th  3   ions    of    inorganic    salts,    th  3  pr3Senc3  of  which 
is   n3C3ssary  for   th3   nourishmsnt   of    all    living 
organisms.       It   will    b?  found   upon   actually   con- 
structing     this    spiral    of    atomic   models    that    thECs 
is    •■^mpl  ?   room   for   th3   complex    sid3   chains   R   if   the 
fourth  valency   of    th  3    alpha   carbon    atom    is   occupi3d 
by  hydrog3n,    but   that  th  3   pr3sence  of  rnoT  2  complex 
groups    in  this   position  would  make   the   spira] 

structur3   impossible.      We  find,    hov;e-B3r,    that   the 
decom.position  products   of  proteins    always  have  a 
hydrogen   atom    in   this   position. 

It   will    be  observed   that    the  polyp  3ptide 
spiral    in    the  accompanying   diagram  has   an    3xposed 
amino    group    at   one    end,    and    an    exposed   carbonyl 
group    at   the   other    end.       Th  eor  3ticall  y   it    appears 
that    additional    amino    acid    radicals    could   be  add  3d 
to    eithsr    end  of    th  3    spiral,    although    there  may 
be   some   at  pr3sent   unknown   reason  why  growth   can 
take  place   at  on  2    end   only.      A   spiral    with   an 
expos  ?d    amino    group    at    th  j    free    end  may   be  d3sig- 
nated   as    positiv3    {  +  ),    and   on3  with    an    3xposed 
carbonyl    group   at   the  fr3G    end   as   negative    (-). 
A  distinction   should   also    b  j  made  betw3en   right- 
hand  3d    (r)    and  left-handed    (l)    spirals. 


14. 


Th  3   similarity   in   forTj   and   app  3aranc  :    of   a 
polypeptide   spiral    to    a   "bacillus   or   a  spirillum 
will    be    apparent.       It    should   be   capable   of    graving 
-endwise   by   condensation  with    additional    amino    acid 
radicals,    and   as    long    as    tho   spiral   form    is  main- 
tained  the    structure  will   possess    definite  mor- 
phology.      It  must    remain   permanently   right-handed 
or  left-handed  which    appears   to    account    for   the 
optical    activity   always    s^±Libited    by   substances 
obtained   from   living   organisms.       It    should   be 
capable,    during   growth,    of    acquiring  different 
arrays    of   side   chains   upon   being   nourished  with 
different   kinds   of    amino    acids,    and    thus    exhibit 
the   characteristic   of   variability.       It   would  not, 
however,    upon   division,    be  capable  of   transmitting 
to    its   progeny   any  permanently   inheritable      ch '  rac 
teristics,    and   can    therefore   not    be   regarded   as   a 
complete   living  organism. 


15. 


The     Linking      of Pol  ypeptide      Spirals 


Since   th  ^   distance  between   the    centers   of 
adjacent    carbon   atoms    is    about    1.54  x   10"®    cr. , 
the  diameter   of    a  pol;>'p  ept  ide   spiral,    as   measured 
between   the   centers   of   the   •^toms,    would  be    ^bout 
?.l   X   10~°    cm.       It   will    therefore   require   several 
hundred    spirals    arranged   side    by   side   to    produce 
an   organism^   at    large    ^s    the   sm.a]lest   visible 
bacillus,    whijQh  m2asure3    about   1000  x   10"^    cm 
in   diameter.       In    order   that    the    organism  may 
possess    definite    individual    characteristics,    these 
spir'-Qs  would  hav  b   to    be    coupled    together    in    some 
permanent  m.anner,    but    after   they   are  thus    coupled 
tog  3th  er,    they  will    have   a    tendency   to    preserve 
their   arrangs-ment   throughout    growth,    and   if    trans- 
verse  fission   occurs,     each   portion   would  hav3    to 
continue  growing   according    to    the   originpJ    pattern, 
There  will    thus    be   exhibit  3d,     in   the   simplest 
possible  mann3r,    a  proc3ss    of    inheritanc3   by  vmich 
parental    characteristics   are  preserved   throughout 
growth    and    transmitted   to    th  3  progeny. 

It    appears    that    there   ar  3  only   a  limited 
numbsr   of   ways    in   which    adjacent    spirals    can 
be    connect  3d    tog3th3r.       The   connecting    ccm.plexes 
must   be   conparat  iv  3I  y   simple,    b?caus  3   if  more 
than    a   cert^^in   number   of    int  srmiDdiat  3   atoms    are 
pr3S3nt    their  m.ovBmonts   v:ill    no    longer   be 
definit3ly   coordinated   so    as    to    form   th  3   r  required 
int3rmediat3   structures,    but   will    b3  m5r3  or   1  3ss 
at    random.       In    ord3r   to    d?t3rmin3   the  nature  of 
thes3   conn3cting    complexes,    th  3  use  of    atomic 
models    is    r  3ccm.mend  3d,    b'^caus3   the  probl  3ms 
encountered  hsre   ar  3    structural    rather      than 
dynam.ic  . 


Th3   form   of 
most   fraquontly    in 
conn  Oct  ion   lD3twien 
of    a   C3ntra]    ^^arbo 
which    aro  usua]ly 
atoms    of    amino    aci 
from    such    connscti 
a   study  of   protein 
two    typ^s   of    such 
pro t  3 ins . 


16. 


connecting   complex   which   occurs 
natur3   appears    to    be   a  triple 
thrcD   adjacant    spirals   by  m, 3-^ns 
n   atom.      The   compl  3X  groups 
attach  3d   to    the   alpha  carbon 
ds    arc    3vid3ntly   the   fragments 
ng    comp]  exes.       It    appears   from 

d  3composit  ion  products    that 
tripl 3   connections   occur    in 


Leucine,    phenyl -al  an  in  e,    and   tyrosine  have 
a   triple  junction    at    th  3   gamma   carbon   atom,    with 
an   intermediate  -CHo-   group   between   this    triple 
junction    and   the   -CH   IHig-COOH   group.      The   complete 
tripl  3  junction,     (assuming    it    to    be  the    same  on 
all    thr3e    sides,)    tog  3th  er  with   one-half   of    each 
of    the    three   adjacent    spirals,    will    therefore 
app  ear    s omi  ewh at   as   follows: 


OC 


MI 


\ 


\ 


CH 


CH^ 


CH 


CH, 


CK, 


1^: — CH 


CH 


CO 


CO 


HF 


A   triple  junction   of    the   gamima-gamma-garrima   type. 


17. 


which  liii    r     P^°^-:^^y  ^'-^-    typ.  of  trip!  3  junction 
whichwill    form  most   rs-'^.dily   in   naturo.    b^causo   if 

thev  wn,nT>;^'^';   "'''2-   groups   W3re   introducad 
they  would  have   too   much   f  r -dom   of  mov  3m  3nt    to 
produce   the  triple  junction   spontaneously.      Hydro- 
carbon   chains   will    not    react   with    3ach   oth^r   ^f 
they   are   capable  of  movement    at    random    in   any^ 

wnnTr^""'''.^''?  ^^^^    '"   ^^^^    ^^'   condition  which 
would    exist    at    any  point    biyond    th3    gamma   carbon 

-^A.        "^^*    2"    "^^^  0th  3r  hand,    we  omit    some  of  th - 
xntarmediate-GHg-^-   groups    and   attempt    to    form   the 
triple  junc-:ion   at    the   b3ta   carbon   atom      th - 
spirals   will   have  to    b3  brought    so    cl.os3   togeth-r 
that  there  would  probably  be   considerable  repul- 
sion  betwaen   them   due  to    th  3rmal    vibration   of    th - 
atoms.       Such   a   triple  junction    could  prooably  not 
form    spontaneously  unl  3ss    the   spirals   were   crowded 
together   from   the  outsida,    but   the  prssence   of 
substances    like   iso-leucins   and  valine   ^Tiong   th - 
decomposition  products   of  proteins   seems   to    show 
tnat   triple  junctions   of    the   beta   tyiDe   do   occur 
at    times. 

The    existence   of   both   beta   and   g=^mma  junc- 
tions   in   the   same  prot  3in    is    indicated   by   the 
occurrence   among  protein  decomposition  products 
of^  substar.ces   like   val  yl -1  eucin  3  which   contains 
a  beta  junction    at   one    end    nf   the  rnol  ecul  3   and 
a  g^mma  junction   at   the  other    end. 

If   W3   connect   togeth3r   a  lar/^3   numb  3r  of 
spirals    by  means   of    triple  junctions   of    eith  sr 
the  beta   or   ths  gamma  type,    th  ay  will    form 
coll  ectiv  sly   a   cluster   of  hexagonal    compartments. 


18 


The   cellular   structure   of  proteins. 

In  living   tissues    these  will   "be   filled  with  water 
or   dilute    salt   solution,    and   it  will    be   observed 
that  the  vacant   spaces    in    these   compartments   have 
a   combined   cross-s  ection<al    area   equal    to    about 
three-fourths    of   the    entire   area  of   the  figure. 

The  hexagonal   form   of    compartment    is   believed 
to   be   the  form  which   occurs  most  frequently   in 
nature,    because   the  h3xagon    is    one   of   the   few 
figures  which  when   duplicated  will    completely   cov  3r 
an   area  of    indef init olsize.      The  only   other  possi- 
bilities   are   quadrilateral    and   triangular   compart- 
ments,   but   as    these  would   require   the   coupling 
together  of   four   or   six   spirals    respectively, 
it    is    considered  highly   improbable   that    they  occur 
to    any  great    extent    in   nature.      It    is   doubtful 
whether   connecting   complexes    between   six   spirals 
could  form   spontaneously  und 3r   any   conditions, 
but   connecting   complexes   between   four   spirals 
could  probably  be   formed    occasionally   as   follows: 


19. 


A      A 


CH  —  CH 


CHp 


CH, 


CH 


CH 


A   cluster  of   thr-ae  polypoptide   spirals   with 
a   coTi]pl-3t3   tripl3  junction   at    th 3   canter  ought   to 
possDss    all    th  3  fundarn  Bntal    characteristics   of 
life,    provided    it   is    equipped  with   a   stable  outer 
structure.      A  group   of   three  hexagonal    compart- 
ments  as    illustrated   on   tha  precedirg  page   could 
probably  not    exist    in   nature  becausD    each    com- 
partment would  have   three   exposed   corners  which 
would   rander   it   very  vulnerable.      Regardless   of 
how  many   additional    compartm3nts  W3   add   to    this 
structure,    the  m^aximum   numb  sr  of    exposed   corners 
can   nevsr  b  ■;  less   than   two.      But   at   th«    surface 
of    the   organism    th3re   is   really   no    nscessity  for 
confining   ourselves    to    the  use  of  hexagons.       If, 
for    example,    we  form  th  2   surface   structura  of 
pentagons    instead   of   hexagons,    the   number   of 
exposed   corners   on    aach   compartmant  would   be   re- 
duc  3d    to    one,    and  our  organism  v;ou]  d   appear   in 
cross- section   somewhat   as   follows: 


20. 


Cross-section  nf    a  simpl 3  living   orgnnism, 


Perhaps  cystine,  which  occurs  in  small 
aTTiounts  in  the  dGcompcsition  products  cf  ill 
proteins,    forms   part   cf   this    surface   structure. 


21. 


Direct      Ch-smical  Union "b  3 1  ;v  o  jn      Sp  i  r  "^J.  r- . 


Ws  hav3  har-atnl'crs   aGSurnad   that    c^nnDction 
"between   adjacent    spirals   t.ak^s   plac3   only  through 
the  hydrocarbon   side   chains    attached   to   the   alpha 
carbon    atcms.      This    is   undoubtedly   the  priir.ary 
mode   of    connection,    but   af t  :r   tv/o    spirals    are 
thus    connected   together   there  may  bj    a   secondary 
connection   between   th  3  arnino   groups   of   on^   spiral 
and   th3   carbonyl    groups    of   the   other.       If   both 
spirals   have   the   sa:!ne   dirsction  of    twist,    the 
amino   hydrogsn   cf    on  3   spiral    will    b3  posit  ion  jd 
directly   opposite  the   carbnnyl    cxyg  i^n   of   th3   other 
spiral,    so    that  there  will   bo  a  tsndsncy  for  wat  3r 
to    split    ^ff,    leaving   the   amino    nitrogen   to    combine 
directly  with   the   carbonyl    carbon.       In    this  manner 
there  m.ay  be  produced    either   thj  pyrrole   or  the 
pyrimidine   ring,    depending   on  wheth3r   the  primary 
connection  was    of   the   beta  or   of   the   gamma  type. 
As    shcv\rn    in   the   follov/ing   diagrams,    various    dif- 
ferent   configurations    can   b3  produced   by  joining 
adjacent   spirals   directly  to    3ach   other: 


V-r^' 


op 


A   carbonyl    carbon    atom    should   "be   abl  o  to 
units   in    this   mann2r  with    two    nitrogsn    atoms    of 
an   adjacent    spiral,    and    since   it    is   already  joined 
to    one   nitrogen    atom   of    th  ?   same  spiral,    thare  will 
bs   produced    in   this  manner   th?    guanidine   complex 
which   occurs   at   one    3nd   of    the   arginine  rKolecuJe. 
The   three   intarmediate   -CHq*   groups   of   the   arginine 
molecule   are   exactly  the  number   that   would   occur 
in  passing   over   to    the   next    adjacent    spiral    if    the 
intermediate  junction    is   partly   of    the   beta  and 
partly  of    the  gamma  type. 


HCH 


CH 


OC 


im 


Arginine   in  situ. 


Conclusion. 


The   c^rractness   of   the   above  hypothesis 
depends    in    n.  ln.rge  measure  on  wh  eth  3r  we  were 
justified   in  -ai^Jcing   the   assumption    that    the 
fundamental,    life  processes    ar  3   inherent    in   the 
molecular   structure  of   the  proteins,    and   are  net 
primarily  dep3ndent   on   any   specific   physical 
heterogeneity.      This   assumption   is    clearly   cr^n- 
trary  to    orthodox  theories  which   attribute  just 
as  much    importance  to    the  physical   heterogeneity 
of   protoplasm   as   to    the   chemical    comstitution 
thereof,    but   the  failure  of   orthodox  theories 
tc    account   for   and    explain   th  3  fundamental   life 
processes    should  be  sufficient  justification  for 
attempting   the   solution   of    the  problem   on   a 
new  bas^. 

The  molecular   structure   of  proteins   v^ill 
probably  never   be    established    conclusively  by 
chemical    analysis    n2one.      It    is,    in  fact,    doubt- 
ful  whether  protein  molecules    are  of  uniform   size 
and   composition.      According    to    the  foregoing 
hypothesis   protein  m.oleculos,    when   dissolved   in 
water   or   dilute   salt    solution  probably   consist  of 
platelets   of    irregular  form   and   size  which  have 
become   separated   from    a  cluster   of  hexagonal    com- 
partments.     The  methods   of    analytical    chemistry 
can   tell   us   only  what   the  fragr^ients   of   protein 
structure   are  and  what   the    elementary   composition 
thereof    is,      In   order   to    find   out  how  these  frag- 
ments  were  joined   togethsr  we  miust   take   into 
consideration   the  principles   of   biology,    although 
after   a   certain    scheme  has   been   suggested,    we 
may  determin3   the  probable  correctness    th3reof 
by   comparing   the    elementary   composition   of    such 
hypothstical    structure  with   that   found    experi- 
mentally. 


24. 


All   proteins,     (v;ith   the    oxc  option   of  prct- 
R-mines   and  histonos,  )    hav::;    apprcxitnat oly   tho 
following  p3rc3ntag3   ccTnposition; 

Carbon        Hydro  g2n        Nitrogen        Oxygon        Sulphur 
50-55  6.9-7.3  15.0-19.0      19.0-24      0.3-2.4 

If  WD  takG,    as    a  roprosentativ o   sample  of 
our  hypcthotical    substance,    a  compl  ot  o  tripla 
junction   of    the   gamrna-gamrna-gi^jTiTTia  typo   and   cn3- 
half   of    oach   of   th  3   thr^e   adj  ac  3nt    spirals,    th  on 
the   orapirical   formula  th3r3for  may   b:   dorivod 
as   follows: 

/co\ 

H3 
This   will    give   the   following  percentage  composition: 

Carbon        Hydrogen        Nitrogen        Oxygon 
53.8  5,8  18.8  21.5 

The  values   thus    calculated   are   in   fairly 
accurate   agreement  with   the   exporimental   values, 
except   that    the  hydrogen   is    slightly  low,    but   that 
is   just  what  would  be    expected  because  of   the 
difficulty  of   obtaining  proteins    in  perfectly 
anhydrous   condition.      Another  possible    explana- 
tion for   the   low  hydrogen  percentage   is    that   the 
protein  molecule   in  v/at  er   solution  may   consist   ^f 
only   a  thin    sheet    t^iken   transversely  of   the   ax  3S 
of   the   spirals,    so    that  many   additional  hydrogen 
atoms   or  hydroxyl    groups  v/ill    b^  requirod   for 
combination  with   the  free    ends   of    the   spirals. 
For    exo.mpl  e,    if   wo    include  only   tw^    additional 
hydrogen   atoms    in   our   th3cr?tical   formula,    the 
porcantago  of  hydro g  on  will   bo  brought   up   to    the 
values   obtained    3xp  or im entail y. 


:5, 


If  v;  D   n,ssu-ai^   the  tripl  3  juncticn   tc    "be   only 
tv/c-thirds   gninir.^..   and  on-3!-third   bota,    th  Dn   the 
porccntago   composition  will    b  2   -is   follows: 

Carhrn        Kydrcgcn        Kitrcg  an        Oxygon 
52.1  5.2  20.1  23.1 

Inst3ad   of   dealing  vrith   absoluto  p  3rc  ant  ag  ds 
of    th3  various    elDments,    it   is   b  ott  ^r   to    deal 
with   ratios   of   carbon  tn    nitrogen,    bocauoo  the 
ratio    of   th  es  a  two    values  will   b  l^  un-^ffected   by 
varying   ^^jmounts   of  v^ater   that  may  be  present,    cr 
by  the    extra  hydrogen   that  rno,y  be   attached   to    the 
free    ends   of   the    spir-^2s. 

From   the   above  theoretical   d'lta  wo  obto.in 
the   following   ratios   of   carbon   to    nitrogen: 


With   triple  junctions   of   the 

g  'iTDTn  a  -  g  ^xn-ra  -'.-  g  arnm  a  t  yp  e , 

With   trljftl  e  juncticns    of    the 
b  :^t  a- g  aTP.m a- g omrn a   typ  e , 

With    quadruple  juncti':ns 

of  the   type: 


2.86 


2.59 


^ 


CK  —  CK 


2.14 


X. 


With   quadruple  juncti'-ns 

of   the   type 


CH 


CH" 


CH2 
CHo 


3.00 


27. 


No    att  3Tnpt   h-i.s   bo  on  mad  j  horjinabrva   to 
expl'iin   the   chrcT.oscir.o  mechanism   in   det'^.il. 
ChrcrnoGoiTGS    dc    not   occur   in    the   simplest 
organisms   such   as    the   bactaria,    but    app  3'\r  to 
bo   th3  first   stago   in    ovoluti^n   to   high  or 
typos,    whorsas    the  purpr^so  of   th  o  prosont 
treatise   is   to    oxp] ain   1  if o  processes   only 
in   so   far   as   they   aro  of   universal    occurrence 
and    common   to    all   forms    of   life. 


.-7 


/. 


^:^t^JC 


u^iux 


C^b 


CilL 


X^ 


V 


o^ 


o 


'o/. 


■^•l 


srii,  — ^